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Submitted SNP(ss) Details: ss19839836           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuFF-200402.chr1.NT_034471.3_263682
RefSNP(rs#)rs2905062
Submitted Batch IDCSHL-HuFF-200402
Submitted DateFeb 21, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 21 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUFF-200402
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuFF101b19600400915716.R 422 53HuFF101b19600401522660.F 175 35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19839836|allelePos=314|len=755|taxid=9606|alleles='G/A'|mol=Genomic
 TTGTGAAGCC ATCCGGGACT GTTCACTCAC TCATTTAAGA AAGGTGTATT TTCCACTTGA
 GGTGTGAGAG AAAGTGTGGT GTTCACTCAT TGCTCTTCCT TCTGGCTTTT ATTTTTCTCA
 CTTTTAGAGA AAATAAGAGA AGTATCCCTG AAGGATGAAA TATCCTCGAA TATGAAAAGG
 TCTGCTCTCT GAAGACCAAC tgtctcagtc tgctttttgc tgctgtaaca gaataccaca
 gacttggtaa tttataaaca gtagaagtcc atgtggctta tgcttctgga ggctgggaag
 tcccaggtta agg
 R
 gctgcatccg gcaagggctt ctcgctgcct tatcacatgg cagaaggcac cttgtggtga
 gacagtgagg aagggctgat ttcactctca caacaaaccc actcccatga taatggcatt
 aatccattca gcagggcaga gccttcgtga ccccatcacc tcttaaggct cccgctcagc
 atggttgcac tggggttaaa tttctaacac ctgaactttg gggacatgtt caaaccatag
 cCAGGGCCCT GAGAAACCCA TTTCCACTGA CTTCAAAATA GTTCATGAAA ATGGAGTGCT
 GAGAGAGCAG CAGGGCATTC ACAAGAATGG TTTTGAGAGG CCTCACTGTG CCAGGCATGG
 CCCTCAGGGC AGGCAGCTCT GCACAGCCCC CCATGGCAGC AGCTGGTCAG GCTGCCCAAA
 CTCACCACTT TGGAATCACT T

  Submitted Frequency for ss19839836 back to top
There is no frequency submission for ss19839836.


  dbSNP summary of Genotypes for ss19839836 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU104104A=0.85576922
G=0.14423077A/A=0.71153843
A/G=0.28846154
Pr(chiSq=0.395,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282A=0.73170733
G=0.26829270A/G=0.48780489
A/A=0.48780489
G/G=0.02439024
Pr(chiSq=2.410,df=1)
=0.150
Genotype
Freq.
HapMap-JPT8080A=0.57499999
G=0.42500001A/G=0.44999999
A/A=0.34999999
G/G=0.20000000
Pr(chiSq=0.251,df=1)
=0.655
Genotype
Freq.
HapMap-YRI120120G=0.88333333
A=0.11666667G/G=0.80000001
A/G=0.16666667
A/A=0.03333334
Pr(chiSq=2.197,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss19839836 back to top
There is no individual genotype data for ss19839836.

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