NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss198811610           
Submitter
HandleBUSHMAN
Submitter SNP IDBUSHMAN-chr1-97038328
RefSNP(rs#)rs54790
Submitted Batch IDBUSHMAN1
Submitted DateFeb 16, 2010
Publication CitedN.D.
First entry to dbSNPFeb 16 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBUSHMAN_METHODS
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss198811610|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GGTGTAAAGA TAGCCTAAGT AGTTTTTCTA AGTTATCAGC CGCGGGGAGG AAATAATGAA
 AGAGAAATAC ATACGAGTGG CATTAAGGAC AGGTGGTGGC TTCTTTTACC TATTAAAGCA
 TTCTTACACC ATACTGTGAA CTGTGTAAAA GGAAGGATCA TTGGACATAA TAGATTATCT
 GACAGGGTGG TCCGGAATGG
 Y
 GGAAGTAAAT CGACAGGTGA GGACACTGAA TTAGCATTCA GACAGTGGGG ACCTCACACC
 TTGTATTCCC TTTTTTGGTA AGATTTTTAT TACCTCCTTA GAAAGAGGTA AATTCATCTA
 TTTCGAGCCC AAATTTTTCT GTCTAGAAGA TTGGTAGTCT TATTTTTACT AAAGTACAAG
 ATTATTTAGT AAAAGGTAGC

  Submitted Frequency for ss198811610 back to top
There is no frequency submission for ss198811610.


  dbSNP summary of Genotypes for ss198811610 back to top
No sufficient data to compute Hardy-weinberg probability for ss198811610.


  Submitted individual genotype for ss198811610 back to top
There is no individual genotype data for ss198811610.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement