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Submitted SNP(ss) Details: ss20516951           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr1.chr1.NT_077383.3_1206126
RefSNP(rs#)rs1043879
Submitted Batch IDWGSA-200403-chr1
Submitted DateMar 18, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 18 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01001831.1 13851

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss20516951|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AATGGCCACT TATAAAAGTG GCTCAAAAAC AAATGATTTT AATTCTATTT AAAAAGTGTG
 TCAGTAGGCC CCCAACTATC ACCACAAAGA TAAAAACACA AAGATGCAAA AATACATCCT
 AAATCCAATT TTTGAGTGTT CAATGCCTGG ATATACTTAC ATTAGAGCTA AAAGCTATGC
 TTCTTTGCTG GGTAGGTTTT
 Y
 CATTGGGATT TCGAGTTCCA TCTTCTGTTA CCTTTTCCGA CAGCTAGACA GGTTAAGAAA
 AAGTGTAATT TTAAAACACA TACCCTTGGT TTCTAAATCC TATATTAAAA AATAGCCTAA
 TTGTAAACAA AATTTAGCTG TAGACACAAA AATCAACTTG GATCTAACAG CCTAAGTAAC
 AGAACTATTG AGTTTTCCCC

  Submitted Frequency for ss20516951 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184T=0.74000001
C=0.25999999
0.385 +/-0.0441_2004SEQUENOM


  dbSNP summary of Genotypes for ss20516951 back to top
No sufficient data to compute Hardy-weinberg probability for ss20516951.


  Submitted individual genotype for ss20516951 back to top
There is no individual genotype data for ss20516951.

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