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Submitted SNP(ss) Details: ss20563260           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr1.chr1.NT_004610.16_1828151
RefSNP(rs#)rs522496
Submitted Batch IDWGSA-200403-chr1
Submitted DateMar 18, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 18 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01001462.1 2770

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss20563260|allelePos=305|len=505|taxid=9606|alleles='C/T'|mol=Genomic
 AGACACCTCC ACACCCCTCT GTTCTCACCA CGCAGGCCCT AAGGCGGCAT TGAATGCAGT
 CTggagtcaa gaactcaagt tcaaatcctg gctcagactc tttgctgtgt gaccttgggc
 aagtcctggc atctctttga gcttcagctt tctcaGGACC AAACCCACGG TGAAGGTACG
 GTGATATCGC GTTGGACCCC AGCGGCAGCC CTGCCCTTCC CGCTGGGCCC CACCTGCCTG
 TCCCTTCTCC ATGTTCCCAC CCGCTTGGGT CTCACCTCCC GGATCAGCTG CTTCTCGGCC
 TCCA
 Y
 GTCATGCTGG ATCACAGGTT GGGGCAACAG CTTCTCCTCC ACCTGCACAG GGTCTGGGGG
 CACCTGCCTG GACAGCAGGG CTGGGGGAGA AACAGAAATT AGCAGCCAGG ATGAGGGGCA
 CATTGTGTGC AGGAACTAAG CAGAAATCTA TAAAAAGACG ACCTCATGGT CATTCAAGAA
 GACTTTAAAG TATTCAGCTT

  Submitted Frequency for ss20563260 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
CEPH
- MULTI-NATIONAL 		184T=0.69999999
C=0.30000001
0.420 +/-0.0381_2004SEQUENOM


  dbSNP summary of Genotypes for ss20563260 back to top
No sufficient data to compute Hardy-weinberg probability for ss20563260.


  Submitted individual genotype for ss20563260 back to top
There is no individual genotype data for ss20563260.

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