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Submitted SNP(ss) Details: ss2115174           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0836635
RefSNP(rs#)rs1339866
Submitted Batch ID001018_25
Submitted DateOct 19, 2000
Publication CitedN.D.
First entry to dbSNPOct 19 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2115174|allelePos=495|len=569|taxid=9606|alleles='G/T'|mol=Genomic
 tctgccaatc tatgagcatg ggatgcattt tcatttgttt gtgtcatcta tgatttgttt
 cagcagtgtt ttgtagttct ccttgtagaa atctttcacc tccttggtta agtatattgc
 taggtatttt tttgtttgtt tttgcagctg ttgcaaaagg gattgagttc ttgatttgat
 tctcagctcg gttgtcgttg gtgtgtagca gtgctgctgg tttgtgtacg ttgattttgt
 aacctgagac tttactgaat tcatttatca aatctaggag tcttttggag gagtgtttag
 gcttttctag gtatatgatc acatcactgg catacagtga tagtttgatt tcctcttttg
 caatttgggt gcttttattt ctttgtcttg cctgattgct ccatctagga cttctaTTGT
 TTCTATTTCA GAAGAAGAGG AAAATGATGC ACAAAAACTG CCAAAGATTT GATTAAGTTT
 GCTTAATAAT TTGG
 K
 CTCTAGAAGC AAAACACCTC CCAGAAAAAG GTTTGTTATC CCTAATTTCA TAGCACTGGA
 AGACTTGTGA AATC

  Submitted Frequency for ss2115174 back to top
There is no frequency submission for ss2115174.


  dbSNP summary of Genotypes for ss2115174 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
Caucasian2424G=0.87500000
T=0.12500000G/G=0.75000000
G/T=0.25000000
Pr(chiSq=0.057,df=1)
=1.000		Genotype
Freq.
PDpanel4646G=0.58695650
T=0.41304347G/T=0.56521738
G/G=0.30434781
T/T=0.13043478
Pr(chiSq=0.631,df=1)
=0.439		Genotype
Freq.

  Submitted individual genotype for ss2115174 back to top
There is no individual genotype data for ss2115174.

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