Submitted SNP(ss) Details: ss217314506

Submitted SNP(ss) Details: ss217314506

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_3_CEU_39_chr1_20916748
RefSNP(rs#)	rs601329
Submitted Batch ID	pilot_3_CEU_mar_2010
Submitted Date	Apr 09, 2010
Publication Cited	[1] SNP discovery in 1000 Genomes Project Pilot 3: targeted enrichment and exon sequencing for 1000 human genes.
First entry to dbSNP	Apr 9 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EXON_CAPTURE_SEQUENCING
Ascertainment Samplesize	180
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:503

Fasta sequence (Legend)

 GCCCTCACCT CCACCAGCGG ATAGGCGATC TCGTTGTAGA TCTGCTCGGT GACGTGGTCC
 ACGTGGTAGG CGCCGTCGAA GGTGAACTGC TTGGGCGGCT CGTCGGCGGC GCCCGGGTTC
 TGGATGCAGC ACTGGGCGCG CGCGCAGTCC ACAGTCACCA CGGGCTGGCA GCGCAGCTCT
 CGCTCCCGCT GGTTCATGGG
 R
 CGGCAGCGCA CGACAACCTT CACCGCCTCG GAGGCCATGG CGCCGCGCCC AGGACCAACG
 GGACCAGAGC TGACCCCCGC CCCGCCGGGG ACTCCCAGCA GCCCGGGCCA AGGGGCGGGG
 CCAGCGCCGG CCACGGGGGG CGGGGCCTTG AGGCAGGGGC GGGGCCGCGG CGGGGGGCGG
 GGACCCCTCG GGGGGCGCCC

Submitted Frequency for ss217314506

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_3_CEU_exon_capture_panel - NORTH AMERICA	50	G=0.62000000	A=0.38000000				pilot_3_CEU_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss217314506

No sufficient data to compute Hardy-weinberg probability for ss217314506.

Submitted individual genotype for ss217314506

There is no individual genotype data for ss217314506.

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