NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss217324895           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_CEU_2500_chr15_41333020
RefSNP(rs#)rs555001
Submitted Batch IDpilot_3_CEU_mar_2010
Submitted DateApr 09, 2010
Publication Cited[1] SNP discovery in 1000 Genomes Project Pilot 3: targeted enrichment and exon sequencing for 1000 human genes.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize180
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:7020

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217324895|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 ACCCAGCTAT TTCAGAGCTC GGCTGAGAAA ACTTGTCACC CACATTCTGG CGTCAGTCTC
 ATCCAAGATG GCTTTGCCAG AGGGTCCCTC TTTCACCCAC TGCAGGGGGC AACTGTGAGT
 GGGCAGGGCT CCCGCTGCAC AGCTTCCTCC CTCCCCGGGC ACGCCAGGGA CCTCACCATG
 GCACACACCA CTCTGCTGAC
 R
 TAGACGGGGC TTCCCCGCAG AGCACAGTCT GTGGCTGGGT CAGTCTGGAA GTGCAGGCTC
 TTGTCTAGCA GCTTCAGGCA GATGTCTATG ATTTTGTCTT CAAACTTCGG GGGGAGAGGC
 AGAGAGGGAA GGCACCCATG CTTGTCACGT GGGAGTATGT AAAAAGTAAT GACTTCCCCC
 CAACCCTAGT GGAATATAAA

  Submitted Frequency for ss217324895 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_CEU_exon_capture_panel
NORTH AMERICA
168G=0.65476203
A=0.34523800
pilot_3_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217324895 back to top
No sufficient data to compute Hardy-weinberg probability for ss217324895.


  Submitted individual genotype for ss217324895 back to top
There is no individual genotype data for ss217324895.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement