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Submitted SNP(ss) Details: ss217392159           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_CHD_25_chr1_18025233
RefSNP(rs#)rs3795322
Submitted Batch IDpilot_3_CHD_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize214
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:6316

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217392159|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 AGGATCTCTC CGCCTATCTC CTCAAGAGTC TCTTTAAGGA AGATTGCGAT AGACGCTGCC
 TGTTTCAGCT GGAGACAGTC GCCGTGACTC AGATGAACAA GTGCTACGTG CCGCAGAATC
 TGGGGGAGGC CCTGGACTTT CGTGAGAGGC AGCAGAGTGC CTTGGATGAG AGCAACACCT
 ATCAGCTCCC AGACGGCTCC
 Y
 GCGTGGAGCT GACCCCCATG CAGCGGGTGG CTCCTGAGAT GTTCTTTAGC CCGCAGGTGT
 TCGAGCAGCC GGGGCCCAGC ATCCCACGGG CCATTGTGGA ATCCGTGGAG TCCTGCGAGA
 TCTCCCTGCG CCCCCTGCTG GTCTCCCACG TGATGGCCTG CGGGGGCAAC ACCCTCTATC
 CCGGGTTCAC AAAGCGCCTG

  Submitted Frequency for ss217392159 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_CHD_exon_capture_panel
NORTH AMERICA
214C=0.96728998
T=0.03271000
pilot_3_CHD_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217392159 back to top
No sufficient data to compute Hardy-weinberg probability for ss217392159.


  Submitted individual genotype for ss217392159 back to top
There is no individual genotype data for ss217392159.