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Submitted SNP(ss) Details: ss217399959           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_3_JPT_4_chr1_1110365
RefSNP(rs#)rs116150331
Submitted Batch IDpilot_3_JPT_mar_2010
Submitted DateApr 09, 2010
Publication CitedN.D.
First entry to dbSNPApr 9 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEXON_CAPTURE_SEQUENCING
Ascertainment Samplesize210
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:3533

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss217399959|allelePos=201|len=401|taxid=9606|alleles='T/A'|mol=Genomic
 CCTCCGGACA GTCTGGGAGC CAGTCTCCAG GCACCGTGTG CCCCCAGTTC ATGCAGAAGA
 AGAGCCCTCT GTACATGCTG CTGAAGGAGC ACACGGTGTG GAGCATGGAA CACCTCAACC
 GCTACATCAG TGACACGTTC TGGAAGGCCC GGGGCCTCGC CAAGGACTGG GTCTTCACCA
 CCCTCAAGGT GCGTCCACTG
 W
 GCCCTCCAGT CTGGGAGTGA GATCCCTCGG GGCGGGGGTG TGTGGTCAGG CTGGGCACCA
 GGCACACAGA TGTCCGTGGC GTGCGTGGGC GGCTGCGCTG AAGTGTGACC TGACCGTGTG
 GAACCAAACC CTTCCAGCGT CTCTGCTCAC TTAGCTGGCA GTGCCTGTCC CCAGCAGCCA
 GCAAAGGCCC GGACGGAAAG

  Submitted Frequency for ss217399959 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_3_JPT_exon_capture_panel
EAST ASIA
174T=0.99425298
A=0.00574700
pilot_3_JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss217399959 back to top
No sufficient data to compute Hardy-weinberg probability for ss217399959.


  Submitted individual genotype for ss217399959 back to top
There is no individual genotype data for ss217399959.