Submitted SNP(ss) Details: ss217410949

Submitted SNP(ss) Details: ss217410949

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_3_YRI_16_chr1_3538058
RefSNP(rs#)	rs16823940
Submitted Batch ID	pilot_3_YRI_mar_2010
Submitted Date	Apr 09, 2010
Publication Cited	N.D.
First entry to dbSNP	Apr 9 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EXON_CAPTURE_SEQUENCING
Ascertainment Samplesize	224
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:2265

Fasta sequence (Legend)

 TGCCACGTCC GTGGCCTCGG GGATGTGCTT ACCTTCCCCA GGCACCTGCA CCGACATGCA
 GCCCGCTGGG GACCACAGGT AGAGCCTGCT GCCTCCCGTG CAGATGGCCA GCCGCGGCTG
 CTGCGGGTCC CACTGAAATG CGCGCACTGG GGACAGCTGC TCGAGCACCG CGAACAGCCT
 CAGCTTCTGA ATGTCCCAGA
 Y
 CCAGACGGCA TTGGGAATGT TGTCTGAGGA AGGAAGGACA GGGCACCGGT GTCATCCCTG
 CCTGGCTCCT CTGTGTTGGC CCTGCCCCTC TGCTCTGCTG TTGACACCAC AGGAGGGGAG
 GGGAAGAACC GGTGGGGTGG GGCGGCTGCA CCCTGCAGTC TGGGTTCAGT TGGGCCCTGT
 AGGGCTCCTG GCCAGGGCCA

Submitted Frequency for ss217410949

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_3_YRI_exon_capture_panel - WEST AFRICA	178	C=0.89887601	T=0.10112400				pilot_3_YRI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss217410949

No sufficient data to compute Hardy-weinberg probability for ss217410949.

Submitted individual genotype for ss217410949

There is no individual genotype data for ss217410949.

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