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Submitted SNP(ss) Details: ss218190389           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_YRI_72_chr1_750775
RefSNP(rs#)rs1048488
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPApr 22 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize118
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:232

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss218190389|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 ATTTTTGTTC TCTGAGCTTC TTTCTTAGGG AAGATCCTTC TTGAGAAGCC CCTGCTGAGT
 ATTAGGAAAA TGCATTTCAG GACCTCTCAT CAACACATCC TCTTTCTTTA CCACAACCAC
 ATATATGGGG GCATAACTCA ACATGTGTAA AAGACAATCT TCTGCTTTTC ACTGAACCTC
 CAGGAATTCA GGACAATAAA
 Y
 GTCTACATGG AGACCAACAG GTGAGTTTTT CTGCCCCTTC TTTCATAACA CCGTTCTTCC
 CTAGTGAAGT CCACACACAT CCTTACATGG CAGCTGTGGG TATATCAACT GGTCTGACCC
 CTTTTAGTCA CAGAGCCTGA AGTCTCTGCT AGTACCTGCT GAGCACAGGG TCATGGGTGA
 GAATGGGCAA GTCTTTTTCT

  Submitted Frequency for ss218190389 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_YRI_low_coverage_panel
WEST AFRICA
118C=0.54237300
T=0.45762700
pilot_1_YRI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss218190389 back to top
No sufficient data to compute Hardy-weinberg probability for ss218190389.


  Submitted individual genotype for ss218190389 back to top
There is no individual genotype data for ss218190389.