Submitted SNP(ss) Details: ss218548429

Submitted SNP(ss) Details: ss218548429

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_YRI_358112_chr1_99773415
RefSNP(rs#)	rs6678176
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	Apr 22 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	118
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:217

Fasta sequence (Legend)

 GTTCTGTTTT CTTCTCTCCT AAAAGGAGTG GCATTAACCC TAAATTGCAC AAGATGTTTA
 AAAGATGCAG AAATAACTAA TAGTTTTTGC TCTCAGAGCC TTCATATGTG ATCCCTATGG
 TGTTGTCCTA CAATCACCTA ATTCAGAATC ACTAGGTGTG TTTGTTTAAA ATGGAGATTT
 CTGGTCTCTG TACCAGGCAT
 Y
 GTGATTCAGG ACTTATGTGT ATCACAACCA GGCATATATA TTTTCAACAA GTTTCCCATG
 TGATTCTAAT GCATATGAGA GTTTCGGAAC CATAGGTCTA CTGAAGAGGG AACTGTTATG
 GGAAAGGAGT CCCGATTCAG ATCCCAAGAG AGGGTTCTTG GATCTCACAC AAGAAAGATT
 TCAAGGCGAG TCCACGGAGT

Submitted Frequency for ss218548429

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_YRI_low_coverage_panel - WEST AFRICA	118	T=0.56779701	C=0.43220299				pilot_1_YRI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss218548429

No sufficient data to compute Hardy-weinberg probability for ss218548429.

Submitted individual genotype for ss218548429

There is no individual genotype data for ss218548429.

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