Submitted SNP(ss) Details: ss218960243

Submitted SNP(ss) Details: ss218960243

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_YRI_769926_chr1_235240878
RefSNP(rs#)	rs10925290
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	Apr 22 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	118
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:230

Fasta sequence (Legend)

 CATATCCACT CATTCTCCTT AGTAATCATT GATTGCCCCT CAACGGAATG ATCTACATTC
 CCTATCCCTC CCTCCCCTCT GGAATAAGAG CATATAACAT CTGGGCCTCC CTAGGATAGG
 GGGTCATCTC TCATTGAGAT GGGGGTTCTC CCTCCCGTGC ATGTGAATCA ATTTTCATGG
 CTTTTCTCCA ATTAATCTGC
 Y
 GTTTGTCAGT TAAGTTTTCA GTGAAACTTC AGAGGGCAAA GGGGAAGTTT TCCCTTGGCC
 CCTGCAAGGG AAAGAAATGA GCCTTCTCTT CTCCCATACT CCTTACTTAC TCAGAACTGT
 GCTCTAGCAA ATGCTCAGCA CTATTTTTGT TAAAAGACTT GTCCAGAGCT GGGGCCTAGG
 ACCTAAGTCT CCAATTCTCA

Submitted Frequency for ss218960243

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_YRI_low_coverage_panel - WEST AFRICA	118	C=0.72881401	T=0.27118599				pilot_1_YRI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss218960243

No sufficient data to compute Hardy-weinberg probability for ss218960243.

Submitted individual genotype for ss218960243

There is no individual genotype data for ss218960243.

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