Submitted SNP(ss) Details: ss2233768

Submitted SNP(ss) Details: ss2233768

Submitter
Handle	TSC-CSHL
Submitter SNP ID	TSC0633788
RefSNP(rs#)	rs667089
Submitted Batch ID	001018_24
Submitted Date	Oct 20, 2000
Publication Cited	N.D.
First entry to dbSNP	Oct 20 2000 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TSC-SANGER-19-26
Ascertainment Samplesize	10
Population	N.D.

Allele
Observed Allele	A/T
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 4
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGCCTAACAA ACACTTACTC ATCCTTAAAG ACCAAAATCA AATGTTCTCT CCTTTGTGAA
 AACTGTCAAA CCTATCCATA AGAAAATTTG TTCCTTCCAA TATGTTCACA CAATCCTTTA
 TATAGCTTCA ATTCCAACAC CTCTTTCATT GTTTTGTGAT AAACCATTTG ATTCCTTTCT
 TCCTTACTGA CCATAGACTC CAAGAGTCTT ACTCATTTTA TATTTGATAT TTTTACATTG
 CACCATATCT AGACC
 W
 CAGTAGACAT TCAGTAAATC TTCCTTTGAA AGGAAGAATA AATAAATTTT GAGtagatag
 atagataaat ggatggatgg ataCATGACT ACCTATAGTA ATGGTCTGGA GTTTCAGCAT
 CTTTCTTCGT GGCATCTGTA TAAGCCCATT CTCAGAGACA CACCTCACAT CTGATGTTTG
 GGGACCATCA ACTCTGATAG CTTTATATCT TGGAAGAACC ATTGATTTTT CTTCCTT

Submitted Frequency for ss2233768

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
CEL_caucasian - MULTI-NATIONAL	60	A=0.52999997	T=0.47000000	0.498 +/-0.011	TSC-CELERA-CEL_caucasian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_african_american - NORTH AMERICA	60	T=0.63000000	A=0.37000000	0.466 +/-0.046	TSC-CELERA-CEL_african_american-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_caucasian_CEPH - MULTI-NATIONAL	320	T=0.51999998	A=0.47999999	0.499 +/-0.003	TSC-CELERA-CEL_caucasian_CEPH-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_asian - EAST ASIA	56	T=0.75000000	A=0.25000000	0.375 +/-0.082	TSC-CELERA-CEL_asian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL

dbSNP summary of Genotypes for ss2233768

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
CEL_african_american - NORTH AMERICA	60	60	T=0.63333333	A=0.36666667	A/T=0.53333336 T/T=0.36666667 A/A=0.10000000	Pr(chiSq=0.660,df=1) =0.439	Genotype Freq.
CEL_asian - EAST ASIA	56	56	T=0.75000000	A=0.25000000	T/T=0.53571427 A/T=0.42857143 A/A=0.03571429	Pr(chiSq=0.571,df=1) =0.479	Genotype Freq.
CEL_caucasian - MULTI-NATIONAL	60	60	A=0.53333336	T=0.46666667	A/T=0.73333335 A/A=0.16666667 T/T=0.10000000	Pr(chiSq=6.718,df=1) =0.010	Genotype Freq.
CEL_caucasian_CEPH - MULTI-NATIONAL	306	306	T=0.50980395	A=0.49019608	A/T=0.50980395 T/T=0.25490198 A/A=0.23529412	Pr(chiSq=0.061,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss2233768

There is no individual genotype data for ss2233768.

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