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Submitted SNP(ss) Details: ss226080378           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_YRI_7890061_chr13_23931290
RefSNP(rs#)rs4986819
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPApr 22 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize118
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:173

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss226080378|allelePos=201|len=401|taxid=9606|alleles='G/C'|mol=Genomic
 TATTTCACTT TTCAACCACG TGCATACATT GCTTTGATAA GATAAAAGTA GTGTTAAAAT
 AACAGCTCTT AAGAAATCAA AGATGCACTA ACCTTTTGTT TCAGTTCATG TGTATCACTG
 AAAATGAATT CAATCACATA CGGCATCTCA ATAGACATAG TCAAAGAGAA GCTAGCAAAA
 ATGAAGAGAA AGTTGTCTTA
 S
 TCTACGATCT TAAATTTCTA TCTGAAATTA TTTCAAACAA TTCTAAATGG AAATTTAAAC
 CAGAAAACCA ATATCCATTG AATTGACAGG TTTTATATTT TAGGTACTAA CCTTTGCTTT
 GTTCCTATTT CTTTTATACA AATCTTCTCT ACTGTATCCT GTTAAAAGAA AAATACATTT
 GTATAACTAA GCATATATTA

  Submitted Frequency for ss226080378 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_YRI_low_coverage_panel
WEST AFRICA
118G=0.85593200
C=0.14406800
pilot_1_YRI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss226080378 back to top
No sufficient data to compute Hardy-weinberg probability for ss226080378.


  Submitted individual genotype for ss226080378 back to top
There is no individual genotype data for ss226080378.