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Submitted SNP(ss) Details: ss227408857           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_YRI_9218540_chr16_86433676
RefSNP(rs#)rs55694638
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPApr 22 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize118
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:250

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss227408857|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CACCTTGGTG GTCCAGGGAA CACCGCAGAG TGACGAGGTG AGCAAATTTC AAAGGGGACC
 CGTGAAGGGA GGTTCCCATA AGACCTTGGC AATTACCCCA AACAAAGTGC GCACTTCAAA
 GGTGGCACCA GATTTCCTAC GGCAGAGCCC ACGGTGGGGT CCCTTCCTGA TGGGTGGACC
 CAGTTCCTGT TTTGCACCTG
 Y
 TTCCCCGTGG CGTGCTGGAT GCCTGCGGCT CTGCCTCCAG CTCTGTCTGT CCCAGATGCC
 AGGTGTGCTG GGGCCTTTGA TCTTCAGCCT ACACTGGGGG TGCTGGTGGG TTCCCTGAGG
 GCTGCCCGCC ACCCTGCCCT GCTGAGGCCT TGATCTCCTG AGAAGGAGCT CCAGGGCCCA
 CTGCCTGCGT GTGATGTATT

  Submitted Frequency for ss227408857 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_YRI_low_coverage_panel
WEST AFRICA
118C=0.89830500
T=0.10169500
pilot_1_YRI_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss227408857 back to top
No sufficient data to compute Hardy-weinberg probability for ss227408857.


  Submitted individual genotype for ss227408857 back to top
There is no individual genotype data for ss227408857.