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Submitted SNP(ss) Details: ss22989578           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDBCM_HTWD_SNPS_200403.chr1.NT_077402.1_43906
RefSNP(rs#)rs2531228
Submitted Batch IDBCM_HTWD_SNPS_200403
Submitted DateMar 22, 2004
Publication Cited[1] SNPs detected by comparing chromosome 16 reads to NCBI build 34 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 22 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBCM_HTWD_SNPS_200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality64029836 -743 34

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss22989578|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 AGCCCTGAAC TGAGATTTGA CTTTACCTTG AGCTTTGTCA GTTTACGATG CTATTTCAGT
 TTTGTGCTCA GATTTGAGTG ATTGCAGGAA GAGAATAAAT TTCTTTAATG CTGTCAAGAC
 TTTAAATAGA TACAGACAGA GCATTTTCAC TTTTTCCTAC ATCTCTATTA TTCTAAAAAT
 GAGAACATTC CAAAAGTCAA
 Y
 CATCCAAGTT TATTCTAAAT AGATGTGTAG AAATAACAGT TGTTTCACAG GAGACTAATC
 GCCCAAGGAT ATGTGTTTAG AGGTACTGGT TTCTTAAATA AGGTTTTCTA GTCAGGCAAA
 AGATTCCCTG GAGCTTATGC ATCTGTGGTT GATATTTTGG GATAAGAATA AAGCTAGAAA
 TGGTGAGGCA TATTCAATTT

  Submitted Frequency for ss22989578 back to top
There is no frequency submission for ss22989578.


  dbSNP summary of Genotypes for ss22989578 back to top
No sufficient data to compute Hardy-weinberg probability for ss22989578.


  Submitted individual genotype for ss22989578 back to top
There is no individual genotype data for ss22989578.