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Submitted SNP(ss) Details: ss230479886           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_84515_chr1_31086772
RefSNP(rs#)rs10753238
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:398

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss230479886|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CAACTGGGAA CCTTAAGAGC TTGCAGGTTG AGAGCTGACA GAGTGGACAG CTGGCTTAGC
 AGGCTGGCCC TGGGCCAGGC CAGGGTTGCA ACCTCACGTC CTGCAGCTTC CAGCGCCCTC
 TTGGACAGAG ACAGATGATT CCAGCTCTCC AAGTCCAATT CTGCCTCTCC TTGGGATATT
 CCCTAATGCC TGAGATCACC
 R
 CCATGTCCTA TTACCTCCTC CACTCTTTAC CCTCAAGATG TTCATTATCT GTCCTCTTGT
 TCCTCTCCTT TCCTCAAGCT CACTTGTGGA TCTGACTGCT GTACTGCCCA CGGCACCTGC
 TGCACCAAGC CTTCCCTCCC CACAGGCCCC ATGCATACGC TGTTTTCCCT GGCTTATTTA
 TTCCTCCCTG CCTTGTCCCT

  Submitted Frequency for ss230479886 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120A=0.50833303
G=0.49166700
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss230479886 back to top
No sufficient data to compute Hardy-weinberg probability for ss230479886.


  Submitted individual genotype for ss230479886 back to top
There is no individual genotype data for ss230479886.