Submitted SNP(ss) Details: ss230649315

Submitted SNP(ss) Details: ss230649315

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CEU_253944_chr1_97049276
RefSNP(rs#)	rs273882
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:234

Fasta sequence (Legend)

 ACAAATGAGA AAATTCAGAC TTGTGAGAAG ATTGTTTTGT TTTTTTTCTG TGCTTAGCCT
 TGGCGAAAAA TCTGAGAAAA CTTAAAATAT ATAACACTGG AGTGACAATC AGGAAGAGTG
 GACTCTTTTT TTTTTTAATT TTTTTAAACA AATTAGGGAA GTAAGTTCAA TGGCTAGTGG
 TTATCATAAT AAGAAAAATT
 Y
 AAGGAAGTTA TAGGTAAAAT AAGAATTTTA CTTTTGTTTC TTTTCTGAAT GGTACCTCAT
 ATTTTGACAG CATTATCCTT TTCAGATCTG TTTTATATTT AATTGGTTTA TTATACATGT
 AAGTATGATT AGATTCATGG ATTTAACCAG TTCTTTGTAT CTTCTGTGTC AAAATGTATA
 CTGTAGTATA CTGTTTATAT

Submitted Frequency for ss230649315

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CEU_low_coverage_panel - NORTH AMERICA	120	T=0.73333299	C=0.26666701				pilot_1_CEU_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss230649315

No sufficient data to compute Hardy-weinberg probability for ss230649315.

Submitted individual genotype for ss230649315

There is no individual genotype data for ss230649315.

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