NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss230767054           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_371683_chr1_165404496
RefSNP(rs#)rs12409740
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:339

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss230767054|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AATGTAATGT ACTTTCCAAA ACTGTATATA AGCTAACCAG CTTCTATCTC CTCTATCACA
 GACGGAGCTG AGCAGAGTTA AGCATTCTGA TTTCAATTCA TGAAGCAGGA AATCTTTCTG
 GCAGGTCCTG GTGAGTTTCC AGTTTGGCTG CTGACAGATA GAGAAATGTG CTTTCTATAG
 CCTCTTCCTC TCCATCCCAC
 R
 TCCACTGTGC ACATTCTTCA GAGCTGGCAA GAGTCACTGA CAGGACATGG CACCCATGGT
 TTGAAGCGCC GACTTTTCTC TGCAGGTGGC CCAGAGCCAG TGAAGGACTT TCTTGAAGCA
 CATAGCACGC CATGGTCATA CAACGGCGAT ATGTAGCCTG GGTGTCACTC ACTGAGACAC
 ATTTCCTCCC TCCACCCCCA

  Submitted Frequency for ss230767054 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120G=0.69999999
A=0.30000001
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss230767054 back to top
No sufficient data to compute Hardy-weinberg probability for ss230767054.


  Submitted individual genotype for ss230767054 back to top
There is no individual genotype data for ss230767054.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement