NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss23143772           
Submitter
HandlePARC
Submitter SNP IDAPOB-009283
RefSNP(rs#)rs520354
Submitted Batch IDAPOB-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143772|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGCTGTTTTT TATACAGACT AGAGATAGGA CCCTGAGCAG GCACGGGAAG GTCTGCCCAG
 GCTTCACGGC CTGGGATCAG TTGAGCCAAG GCTTGAGTCA GGCTCCTCCC TCCCAGCCCA
 GAGCTCTGTC TTTCCTCCTG TCCTTCTGTC ACTGGCACCA AACTGCCTCT AATCTCATCA
 CTTGAGAGTA ATGACTACTC ACCTCTGAGA AGGTTCCGGG GATGGATGTA GGGCAGCAAA
 ACCACCTTCT GTTCT
 Y
 TTCTGCACAA GGACTCCTTG TGCCAGCTCC AAGCCTCTGG CCTTTGAAGA AGTCCCAAGA
 CCTGTGTTCT CCCCCTCTCC CTCATCCCAT GAAGTGGAGT GACTTAGAGT GCTCCAGCTT
 CTTGTCCTTC CACCCCCAGT ACCACCCTGA CCAAACATGG CCCCACTGCC ACCGGCCTGG
 AGCACCCTCT CCTCTCTGTT AACTGGGGCC ATGGAGCACC ATATTACCTG AGCCTGCCTG
 ACCCCTGCAA CATCT

  Submitted Frequency for ss23143772 back to top
There is no frequency submission for ss23143772.


  dbSNP summary of Genotypes for ss23143772 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4646T=0.89130437
C=0.10869565T/T=0.78260869
C/T=0.21739130
Pr(chiSq=0.070,df=1)
=1.000
Genotype
Freq.
PARC-EUROPEAN-PANEL4646T=0.54347825
C=0.45652175C/T=0.56521738
T/T=0.26086956
C/C=0.17391305
Pr(chiSq=0.445,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss23143772 back to top
There is no individual genotype data for ss23143772.