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Submitted SNP(ss) Details: ss23145071           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1130704
RefSNP(rs#)rs16858667
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23145071|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 TTTCTACCAC TTTTTAGTTT GTTTTTTGTT GGTTGGTTGT TTTTTAATCT CTGCTTTTGT
 CATCACCACT CTTTTATTTT ATATCTGC
 AATGTGGCTG TC
 Y
 CCGCTTCCCT GG
 ACACGTGTAC CAAACACAGC GTCCTCAGCC CCTGGTTTGC CATACTTTCT TGTCCTTGTT
 TCCAACAAGG ACAGTCTAGA GACTGGCT

  Submitted Frequency for ss23145071 back to top
There is no frequency submission for ss23145071.


  dbSNP summary of Genotypes for ss23145071 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.97826087
C=0.02173913T/T=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23145071 back to top
There is no individual genotype data for ss23145071.

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