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Submitted SNP(ss) Details: ss23148415           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0979111
RefSNP(rs#)rs17160669
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 16
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23148415|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 GCCACCGCGC CTGGCCCACA AGCATAACTT TTATAAAAAT AATTTACTTT TACAATTAAG
 CTTAGGAATC ACACAGACTC AGGGCTGG
 CTCATGGCTT CC
 Y
 GGCAAGTTAA AC
 TCTGTACTTA GGCTCGGCGC GTATGAAATG GCTAATTCTA ATCAGTGGTG CAATGAAGTA
 ACTCCTCTAA AGAACTTATC GGGCCGGG

  Submitted Frequency for ss23148415 back to top
There is no frequency submission for ss23148415.


  dbSNP summary of Genotypes for ss23148415 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
AFD_EUR_PANEL
- NORTH AMERICA 		4646C=0.86956519
T=0.13043478C/C=0.73913044
C/T=0.26086956
Pr(chiSq=0.126,df=1)
=0.752		Genotype
Freq.
AFD_AFR_PANEL
- NORTH AMERICA 		4242C=0.73809522
T=0.26190478C/C=0.57142860
C/T=0.33333334
T/T=0.09523810
Pr(chiSq=0.399,df=1)
=0.584		Genotype
Freq.
AFD_CHN_PANEL
- NORTH AMERICA 		4848T=0.87500000
C=0.12500000T/T=0.75000000
C/T=0.25000000
Pr(chiSq=0.115,df=1)
=0.752		Genotype
Freq.
HapMap-CEU226226C=0.90265489
T=0.09734514C/C=0.80530971
C/T=0.19469027
Pr(chiSq=0.243,df=1)
=0.655		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.86046511
C=0.13953489T/T=0.72093022
C/T=0.27906978
Pr(chiSq=0.294,df=1)
=0.655		Genotype
Freq.
HapMap-JPT172172T=0.76162791
C=0.23837209T/T=0.63953489
C/T=0.24418604
C/C=0.11627907
Pr(chiSq=9.224,df=1)
=0.003		Genotype
Freq.
HapMap-YRI226226C=0.71681416
T=0.28318584C/C=0.54867256
C/T=0.33628318
T/T=0.11504425
Pr(chiSq=3.331,df=1)
=0.100		Genotype
Freq.
HAPMAP-ASW9898C=0.85714287
T=0.14285715C/C=0.73469388
C/T=0.24489796
T/T=0.02040816
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHB8282T=0.86585367
C=0.13414635T/T=0.73170733
C/T=0.26829270
Pr(chiSq=0.246,df=1)
=0.655		Genotype
Freq.
HAPMAP-CHD170170T=0.80588233
C=0.19411765T/T=0.64705884
C/T=0.31764707
C/C=0.03529412
Pr(chiSq=0.020,df=1)
=1.000		Genotype
Freq.
HAPMAP-GIH176176C=0.52272725
T=0.47727272C/T=0.47727272
C/C=0.28409091
T/T=0.23863636
Pr(chiSq=0.166,df=1)
=0.752		Genotype
Freq.
HAPMAP-LWK180180C=0.63888890
T=0.36111110C/C=0.44444445
C/T=0.38888890
T/T=0.16666667
Pr(chiSq=2.224,df=1)
=0.150		Genotype
Freq.
HAPMAP-MEX100100C=0.69999999
T=0.30000001C/C=0.50000000
C/T=0.40000001
T/T=0.10000000
Pr(chiSq=0.113,df=1)
=0.752		Genotype
Freq.
HAPMAP-MKK286286C=0.68181819
T=0.31818181C/T=0.48251748
C/C=0.44055945
T/T=0.07692308
Pr(chiSq=1.797,df=1)
=0.200		Genotype
Freq.
HAPMAP-TSI176176C=0.91477275
T=0.08522727C/C=0.82954544
C/T=0.17045455
Pr(chiSq=0.125,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss23148415 back to top
There is no individual genotype data for ss23148415.

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