Submitted SNP(ss) Details: ss231543917

Submitted SNP(ss) Details: ss231543917

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CEU_1148546_chr2_201173802
RefSNP(rs#)	rs17448457
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000002
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	T/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:285

Fasta sequence (Legend)

 CATATGTACA CTTACTCTGC AAAAATGTTC CAAGGAAAAC CAGAACAAAT GGATGTAGAA
 AGGAGAGACA TCGCTCATAA ACTGTCTTCT GCCTGATTTC CTTCAGATCT TATCATGAAT
 TTGATTTCAT GGCTGTTTAT GATGTAAACA AGTGATAAGG GGTTCTCAGA TTTCAGGGTA
 CTTAGGTCAT ACATGGGAAT
 W
 TGTGGGTAAT GAAGATTCCT GGGACCCACC CCTAGAGAGT TTGACTCAGT AATATTGTTT
 TTTAAATAAG ACTTCAGATT TAGGGGTGGA GGAGGAACAC CGGATCGCAC TGTGGGAGAA
 ACGCTGGCCT GATGATTTAT TATAAATAAA TAATGTGCCC TACTGCTTTC ACAGTTTAAT
 AACTACCTTT GCTGCTGTAT

Submitted Frequency for ss231543917

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CEU_low_coverage_panel - NORTH AMERICA	120	T=0.79166698	A=0.20833300				pilot_1_CEU_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss231543917

No sufficient data to compute Hardy-weinberg probability for ss231543917.

Submitted individual genotype for ss231543917

There is no individual genotype data for ss231543917.

Disclaimer Privacy statement