Submitted SNP(ss) Details: ss23160617

Submitted SNP(ss) Details: ss23160617

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1128507
RefSNP(rs#)	rs4147606
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTCCCGCTGA AACTAACTTA ATTCTACCTA ATTTGCGTGG GGAGTAGTTG GCCAAATCAT
 CAAATTGTTA ACTTTTTGCT AACATATT
 GTGTAATCAA CC
 Y
 TAGGTGTTAA AA
 AAGGTTTGCT TGTTTCTTTC ATGCAAATAC TAATGTAGCC CTTTTTTCTT AGCGTATAGC
 TTCTGGCCTG GGCTTGGCCT GGATTGTT

Submitted Frequency for ss23160617

There is no frequency submission for ss23160617.

dbSNP summary of Genotypes for ss23160617

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	46	46	C=0.86956519	T=0.13043478	C/C=0.78260869 C/T=0.17391305 T/T=0.04347826	Pr(chiSq=1.252,df=1) =0.273	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	44	44	C=0.61363637	T=0.38636363	C/T=0.59090906 C/C=0.31818181 T/T=0.09090909	Pr(chiSq=1.333,df=1) =0.251	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	T=0.71739131	C=0.28260869	T/T=0.52173913 C/T=0.39130434 C/C=0.08695652	Pr(chiSq=0.028,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss23160617

There is no individual genotype data for ss23160617.

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