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Submitted SNP(ss) Details: ss23434433           
Submitter
HandlePERLEGEN
Submitter SNP IDafd4316237
RefSNP(rs#)rs1130941
Submitted Batch IDAFD_AFR_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize46
PopulationAFD_AFR_PANEL
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23434433|allelePos=101|len=201|taxid=9606|alleles='T/A'|mol=Genomic
 TTCAACCACG TGCATACATT GCTTTGATAA GATAAAAGTA GTGTTAAAAT AACAGCTCTT
 AAGAAATCAA AGATGCACTA ACCTTTTG
 TTTCAGTTCA TG
 W
 GTATCACTGA AA
 ATGAATTCAA TCACATACGG CATCTCAATA GACATAGTCA AAGAGAAGCT AGCAAAAATG
 AAGAGAAAGT TGTCTTAGTC TACGATCT

  Submitted Frequency for ss23434433 back to top
There is no frequency submission for ss23434433.


  dbSNP summary of Genotypes for ss23434433 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4646T=0.84782606
A=0.15217391T/T=0.69565219
A/T=0.30434781
Pr(chiSq=0.208,df=1)
=0.655
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.78260869
A=0.21739130T/T=0.60869563
A/T=0.34782609
A/A=0.04347826
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848T=0.91666669
A=0.08333334T/T=0.83333331
A/T=0.16666667
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23434433 back to top
There is no individual genotype data for ss23434433.