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Submitted SNP(ss) Details: ss235274509           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_4879138_chr10_89717394
RefSNP(rs#)rs11202607
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:314

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss235274509|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 TAGAGTATTG ATTGATTGCT CATAAGTTAA ATTGGTAAAG TTAGAGACAA CTATTCTAAC
 ACCTCACCAT TGAAATTTAT ATGCCACCTT GTCTTTCATA AAAGCTGAAA ATTGTTACCT
 AAAATGAAAA TCAACTTCAT GTTTTGAAGA TAGTTATAAA TATTGTTCTT TGTTACAATT
 TCGGGCACCG CATATTAAAA
 Y
 GTAACTTTAT TGTTCCAATA TGTAACATGG AGGGCCAGGT CATAAATAAT GACATTATAA
 TGGGCTTTTG CACTGTTATT ATTTTTCCTT TGGAATGTGA AGGTCTGAAT GAGGGTTTTG
 ATTTTGAATG TTTCAATGTT TTTGAGAAGC CTTGCTTACA TTTTATGGTG TAGTCATTGG
 AAATGGAAAA ATGGCATTAT

  Submitted Frequency for ss235274509 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120C=0.90833300
T=0.09166700
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss235274509 back to top
No sufficient data to compute Hardy-weinberg probability for ss235274509.


  Submitted individual genotype for ss235274509 back to top
There is no individual genotype data for ss235274509.