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Submitted SNP(ss) Details: ss2353814           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0777657
RefSNP(rs#)rs1517342
Submitted Batch ID001018_13
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2353814|allelePos=107|len=612|taxid=9606|alleles='C/T'|mol=Genomic
 TTTCCCCTAA AAAAAAACAA AAATCATTAT GTTTTCTATT AGGATAGCAA AAATGCCCTT
 TCTTAAAAAC AGTGCACACA ATAATATTCT CAAGGTGGGC AATGTA
 Y
 ATTACACTCA AAGAAATAAA TGCAAACTTA ACTTCTCCCC TGCTTAACTT TTATTTCAAA
 CTACAGGGCC TCAGAGGCAT AAAGATACAA AGGGGAAAGA GCAAAAACAG ACTGGGTAAA
 AACAATGTAT TATTTGTCCA GGTAGCAACA AAAAGGGACC GTCTCACCCC TGCCGTTGCT
 GAGTCTCCAC ATTCCACTCT TCCCCCCGAT CTCGCCTGTT TCACCCACCG ACAAGGATGC
 CAGTAAAAGA CCCAGAGACT CCTGGTCCTC ATTTTTGTTC AGGCAGCAAC CAAGTACCTG
 ACCAAGAAAG TCAATCTCCT ATAAAATGAG GACAGCAGTA ACATCTACCT TTCCAAGGAG
 ACATTAAAAA TGCTTTAAGG CAATAACCTT ATATTATAGT GAACACTTTA AAAATTCAAA
 CTTTAAATAC TGTATTAGTT GGATGTTATG ATCAGGTCAG AGAATATGGG AGAAATTAAA
 TGTGAATTCT AGAAAGCGAC AGTTC

  Submitted Frequency for ss2353814 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184C=0.55000001
T=0.44999999
0.495 +/-0.0101_2004SEQUENOM


  dbSNP summary of Genotypes for ss2353814 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226T=0.51327431
C=0.48672566C/T=0.49557522
T/T=0.26548672
C/C=0.23893805
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484C=0.64285713
T=0.35714287C/T=0.57142860
C/C=0.35714287
T/T=0.07142857
Pr(chiSq=2.510,df=1)
=0.150
Genotype
Freq.
HapMap-JPT170170C=0.61764705
T=0.38235295C/T=0.52941179
C/C=0.35294119
T/T=0.11764706
Pr(chiSq=1.242,df=1)
=0.273
Genotype
Freq.
HapMap-YRI226226T=0.53539824
C=0.46460176C/T=0.55752212
T/T=0.25663716
C/C=0.18584071
Pr(chiSq=1.645,df=1)
=0.200
Genotype
Freq.
HAPMAP-ASW9898T=0.51020408
C=0.48979592C/T=0.48979592
T/T=0.26530612
C/C=0.24489796
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282C=0.70731705
T=0.29268292C/T=0.48780489
C/C=0.46341464
T/T=0.04878049
Pr(chiSq=1.301,df=1)
=0.254
Genotype
Freq.
HAPMAP-CHD166166C=0.60240966
T=0.39759037C/T=0.48192772
C/C=0.36144578
T/T=0.15662651
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176C=0.55681819
T=0.44318181C/T=0.50000000
C/C=0.30681819
T/T=0.19318181
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK178178T=0.67977530
C=0.32022473T/T=0.49438202
C/T=0.37078652
C/C=0.13483146
Pr(chiSq=1.958,df=1)
=0.200
Genotype
Freq.
HAPMAP-MEX100100C=0.50000000C/T=0.60000002
T/T=0.20000000
C/C=0.20000000
Pr(chiSq=2.000,df=1)
=0.200
Genotype
Freq.
HAPMAP-MKK286286T=0.53146851
C=0.46853146C/T=0.51748252
T/T=0.27272728
C/C=0.20979021
Pr(chiSq=0.218,df=1)
=0.655
Genotype
Freq.
HAPMAP-TSI174174C=0.56321841
T=0.43678162C/T=0.41379312
C/C=0.35632184
T/T=0.22988506
Pr(chiSq=2.199,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss2353814 back to top
There is no individual genotype data for ss2353814.

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