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Submitted SNP(ss) Details: ss236176502           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_5781131_chr13_23907441
RefSNP(rs#)rs13428
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:264

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss236176502|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic
 CTGACGATAT GAGGCAAAAG ACAAGGAAGC AGGACTGTGA GCGCGGGCAG TCGGGGGAAG
 ATAGGAACCA ACGGCCGGAG CCAAAATAGG AAAAAAGCTA GAAGTAGATG TTTCCCATGG
 ACTGACTTTC TTAAATAGTG GTTCAGTTGC TGTTGGTTTA CATGACTCTG TCCAACTTAA
 ATCCAATAGC TTTTCCACAC
 S
 TCCACGTTCC AAATTTGATG TGAAAGCTGG TAGTACACCT AAGCCATCCT CTTCAAAATC
 TTCAGAAACT TCTGGCTGAG ATAATTCCAT TTTTCTTTTG GAAAATGGAA TTTTCCTATG
 TTTTCGTTTG GATAAACGTA ATTCTGGCCA CTCAGAGGAT GCTAAAAGAG ACTGCCCAGA
 AGACAGAATT ATTAACGTAA

  Submitted Frequency for ss236176502 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120C=0.50000000
G=0.50000000
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss236176502 back to top
No sufficient data to compute Hardy-weinberg probability for ss236176502.


  Submitted individual genotype for ss236176502 back to top
There is no individual genotype data for ss236176502.