Submitted SNP(ss) Details: ss23643159

Submitted SNP(ss) Details: ss23643159

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd3715631
RefSNP(rs#)	rs3816511
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000017.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACACTGACTT GGAGCCTTCA GAGCGCAGGC GGGAGAGGGG AGGGGAGAGG GGCCGGCTGC
 CTGCTGGGTC CTGCAGGCCG CATTGTAA
 GCTACCATGG CC
 R
 CTCTGACCTG GG
 AGCCCTGGAG TGGGCCTGGC TGACGGCAGC CTGTCCTGAG CCTGCCCTGG CCACAAGGAA
 AGGTTCTAGA GGGAGAGACA GGGCCAGT

Submitted Frequency for ss23643159

There is no frequency submission for ss23643159.

dbSNP summary of Genotypes for ss23643159

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	40	40	A=0.77499998	G=0.22499999	A/A=0.64999998 A/G=0.25000000 G/G=0.10000000	Pr(chiSq=1.604,df=1) =0.251	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	38	38	G=0.76315790	A=0.23684211	G/G=0.52631581 A/G=0.47368422	Pr(chiSq=0.764,df=1) =0.403	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	G=0.86956519	A=0.13043478	G/G=0.78260869 A/G=0.17391305 A/A=0.04347826	Pr(chiSq=1.252,df=1) =0.273	Genotype Freq.

Submitted individual genotype for ss23643159

There is no individual genotype data for ss23643159.

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