Submitted SNP(ss) Details: ss23738860

Submitted SNP(ss) Details: ss23738860

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd3673287
RefSNP(rs#)	rs2238357
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000015.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 4
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CATCTCCTAC CCAGCCTCTC TCACAGCTAT GAATAAATTA AATCTGAATA AATAAATACA
 GATTTGCCTA GAACCTTTAG GAGAGATC
 CATCCATTTC CA
 S
 CTTTTCCTCT TG
 GACACCAACA AACAGACATT TTCATTGGTC TTGTGCCGGT CTCTGGCTTT TCTTCTTCTG
 TCATTAACCC TAAATCATCC CATTCCTG

Submitted Frequency for ss23738860

There is no frequency submission for ss23738860.

dbSNP summary of Genotypes for ss23738860

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	40	40	G=0.72500002	C=0.27500001	G/G=0.55000001 C/G=0.34999999 C/C=0.10000000	Pr(chiSq=0.299,df=1) =0.655	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.56521738	C=0.43478259	C/G=0.52173913 G/G=0.30434781 C/C=0.17391305	Pr(chiSq=0.087,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	G=0.63043481	C=0.36956522	C/G=0.56521738 G/G=0.34782609 C/C=0.08695652	Pr(chiSq=1.043,df=1) =0.317	Genotype Freq.

Submitted individual genotype for ss23738860

There is no individual genotype data for ss23738860.

Disclaimer Privacy statement