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Submitted SNP(ss) Details: ss237388813           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_6993442_chr18_12436689
RefSNP(rs#)rs919
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:293

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss237388813|allelePos=201|len=401|taxid=9606|alleles='G/T'|mol=Genomic
 GATAGCAACT CAACACAGAA AGTCTGATGG AAAGCCATTT TATTTTTCTC TAAATTTTAA
 AATAGAAGAC TTTAATGGAA AACATTTAGT ACCATCATGT CACCCTGAAT GCCAGCAATA
 CCTCGACTTT TACACACGCA GGAAGCCTAG TAAAAGCCCC GTCAGTAGTA CACATTTCTC
 TATGGTCCTT CAACAGTTTT
 K
 CATATACAAA ATTTTCTGCT ATTTTGCTTT AGCAAACAGC AATAAACTTT TGTGTTTCCT
 ATATGACACC TAATATCCAG TCCTACAGTA ATATAGTTAG AAAAATAAAA GGCTTAAAAA
 TTTCATAGTA CGAGTTCATG GTGCTAATAA CAGAATCTCT TTAAACATAA GATCATTTTA
 AGCCTCTTAC ATAACCACCT

  Submitted Frequency for ss237388813 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120G=0.88333303
T=0.11666700
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss237388813 back to top
No sufficient data to compute Hardy-weinberg probability for ss237388813.


  Submitted individual genotype for ss237388813 back to top
There is no individual genotype data for ss237388813.