NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss2380521           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0415258
RefSNP(rs#)rs1538925
Submitted Batch ID001018_23
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2380521|allelePos=1100|len=1187|taxid=9606|alleles='G/T'|mol=Genomic
 AACTTGCTGT TCCCAAAGTC GAGCAGTCCA AGAAGAAATT TTCTTTGTAA AAGGGAAAAA
 GAAATTTGAT TAGCTATGCA TGCATAGAAC CCTAGCAGAA TAATCAATGC ATCACATTAC
 CCTTTGGTGG CTGTTCGTTT AGATATTCCA GGAAGACTAC ACACTCAAAT TCCGTGTTCA
 GCAATCCCCC TGGGAGGGTT GAAAAATGAA CGTATTAATA TGTATATGTA AAACTATTTT
 TTTAAAGAGC AAACCATATT AAGGCAAAAT GCCAAAATAG TGGGACTATT CTCATTAGAG
 GAATAAAATT TAGAATTTGC AGTTTGAAAC ATGGAAGCAT CTTTGTTGCA GAGTCATCTC
 AAGAGAAAAA TGAGTGGATT GAATAACTGT GGCTGAAATA TGGTATTTTT CTCTTGAAAA
 TAATGTAGCG GAATCCCAGT ATGAGCCTGA TCTGTGCCCA CTCTGAGATT TATTCACATT
 TGGCAATGGT GGAGAAACAG GGGGGGCCCT AATAGGATAT ATTTGTTTTG GTTTGCAtat
 tagtccattt tcatgctgct gataaagaca tacccaagac tgggtaattt ataaagaaaa
 agaggtttaa tggactcaca gttccacgtg gccggggagg cttcacaatc atggcagaag
 gcgaaagcca cgtctcacat gtcagcagga aagagacaat gagaaccaag caaagaggaa
 accccttata ccaccatcaa atctcttgag acttattcac caccatgaga acagcatggg
 acaaactgtc cccacgattc aattatctcc caccagctcc ctttcataac acatgggaat
 tacgggagct acaattcaag atgagatttg ggtggggaca cagccaaacc atatcTGTTT
 GGTTTGGGCT TTTTTATTTT TGAAATTTAT Attttttaaa ttggcaaata ataattgtgt
 atatttacag ggtaccatgt tgtattttga tctctatata cattgtAACA AGGGGATATA
 TTTTAATAAG GGGGAGAAAT TAGAGTATCT TGCTAGGGGA CAACTCACCC TGAAGAGAGG
 GAGCGCCTTT GTACATGTC
 K
 GGCCAGAGAT CAACGTGCTC ACATCAGTGG TAGGGTGGGG ATGGCTCATG CGGTGGGTCA
 GACAGCCTTT AGTCTCCCTG CACATGG

  Submitted Frequency for ss2380521 back to top
There is no frequency submission for ss2380521.


  dbSNP summary of Genotypes for ss2380521 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU116116G=0.75000000
T=0.25000000G/G=0.56896549
G/T=0.36206895
T/T=0.06896552
Pr(chiSq=0.069,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090G=0.89999998
T=0.10000000G/G=0.80000001
G/T=0.20000000
Pr(chiSq=0.106,df=1)
=0.752		Genotype
Freq.
HapMap-JPT9090G=0.95555556
T=0.04444445G/G=0.91111112
G/T=0.08888889
Pr(chiSq=0.008,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss2380521 back to top
There is no individual genotype data for ss2380521.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement