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Submitted SNP(ss) Details: ss238114940           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CHB+JPT_17_chr1_710244
RefSNP(rs#)rs116801199
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:158

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss238114940|allelePos=201|len=401|taxid=9606|alleles='G/T'|mol=Genomic
 AATTATGTAT TACTTACAAA GGGGAAAAGT GCACCTTGAC GTGAGAATCT TGGCAGAACT
 ACTTTAATCA AGAGGTTTAG TTGAGCATTA TCAGTAACAG AGTAAATCAA AATCATAAGC
 CACTTGATAG ATACAATGAG AAAATAAAGC ATCACTTCTG TGACACCCTA TAAAAAATGA
 ATCTAATAAT GAGGAAACAT
 K
 AGAAAAAACC AAACTGAGGG ATATTCTACA AATAAATTGT CCTGTAATCT TCAAAAATTT
 CAAGGTTATA AAAGTCAAGA AAAACAGACA ATCTTTTCCA AACTCAAGGG AACTAAAGAG
 GCATGAAATC TAAATGCTTA ATTCTGGATT TCATCTTTTT GATATAAAGA ACAGTATTGA
 GACTATTGAT AAAATTTGAG

  Submitted Frequency for ss238114940 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CHB+JPT_low_coverage_panel
EAST ASIA
120G=0.89999998
T=0.10000000
pilot_1_CHB+JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss238114940 back to top
No sufficient data to compute Hardy-weinberg probability for ss238114940.


  Submitted individual genotype for ss238114940 back to top
There is no individual genotype data for ss238114940.