Submitted SNP(ss) Details: ss238115343

Submitted SNP(ss) Details: ss238115343

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_CHB+JPT_420_chr1_833268
RefSNP(rs#)	rs11516185
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	May 1 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	120
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:172

Fasta sequence (Legend)

 TCACCTCCCT CCTGCCCGGT CCTTCTGACC AGCCGAGAGA GTACAGACCC TCCCCGATCT
 GGGAGGAGGG CCCATCACTG GCTCCCTGCC CCCTGCTCGC CAAGCCCCCC GGGACTTCCC
 AGGCTGTTCC TTCCACCTGA AGGGTCTCCC TCTGGCCAAG GCGAGGCTCA CAGTTCCCCT
 GTCAGGATGG GGCCTTAGAC
 R
 CCCAGACTGA CCCAGTGACA ATCACCTTAA TTCTCCACAG ATAACTACCT ACAAGTTTTC
 TGATTTATTC ATTAGTGGAT TTGTTCGTGA TCAGCCCCAC ACCTGTTAGA ATGGAAGCTG
 CAGGCAGCAG GAACCAGTGT GGCCAAGTCG GAGGGCAGCA CAAGCCGGTC CTCCTCGTGG
 ACAGCAGGTG TGGAGCAGGC

Submitted Frequency for ss238115343

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_CHB+JPT_low_coverage_panel - EAST ASIA	120	A=0.68333298	G=0.31666699				pilot_1_CHB+JPT_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss238115343

No sufficient data to compute Hardy-weinberg probability for ss238115343.

Submitted individual genotype for ss238115343

There is no individual genotype data for ss238115343.

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