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Submitted SNP(ss) Details: ss238325195           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CHB+JPT_210272_chr1_100620557
RefSNP(rs#)rs10875289
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:85

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss238325195|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 TTTTTTTTTT TTTTTTTTTT TGAGAGGGGG TCTCACTGCG TCACCTGGGC TGGAGTGCCA
 TGGTGCAGTC ATAGCTCACT GCAGCCTCAA ACTCCTGGGC TTTGATGATT CTCCCACTTC
 AGTCAACTGA CTAACTGGAA ATATAGGTGC ACACTTCTGC ACCCCACCCA GCTAACTATT
 TTTTTTTTTT TTTTTTTTTA
 R
 TTTTTGTAGA GGCAGGGACA CACTATGTTG ATCAGGCTGG TCTTGAACTT CTGGGCTTAA
 GCTAGCTTCC CGCCTGAGCC TCCCAAAGTG GTGGGATTAC AGGCATGAGC CACTGTGCTT
 GGCCGTCAAT ACAGTTTTAA TTATTGATTT CATTTTCCTC TGAGAAAAAT AAAACCTGAG
 CTTGGAGAAA AAAAAAGTCT

  Submitted Frequency for ss238325195 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CHB+JPT_low_coverage_panel
EAST ASIA
120G=0.75833303
A=0.24166700
pilot_1_CHB+JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss238325195 back to top
No sufficient data to compute Hardy-weinberg probability for ss238325195.


  Submitted individual genotype for ss238325195 back to top
There is no individual genotype data for ss238325195.