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Submitted SNP(ss) Details: ss238354607           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CHB+JPT_239684_chr1_113868514
RefSNP(rs#)rs12021500
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:160

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss238354607|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GGATGTCCAG GCAGAAGTTT GCTGCGGGGA TGGGGCACTC ATGGAGAACC TTTGCTAAGG
 CAGTGCCAAA GCAAAATGTG GGGTGGGTAT GCCCACAGAG AGTCCCCACT GGGGTGCTGC
 CTCGTGGAGA TGTGAGAAGA GGGCCACCAT CCTCCAGACC CCAGAATGGT AGATCCACAG
 ACAGCTTGCA CCAGAAAAGC
 Y
 GCAGACACTC AACACCAGCC CATGAAAACA GCCAGGAAGG AGGCTGTACC CTGCAAAGCC
 ACAGGGACAG AGCTGCCCAA GACCATGGGA ACCCACCTCT GGCATCAGCA TGACCTGGAT
 GTGAGACATG GAGTCTAAGG GGATAATTTT GGAGCTTTAA GATTTGACTG CCCTACTAGA
 TTTCGGACTT GCATGGGGTC

  Submitted Frequency for ss238354607 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CHB+JPT_low_coverage_panel
EAST ASIA
120C=0.56666702
T=0.43333301
pilot_1_CHB+JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss238354607 back to top
No sufficient data to compute Hardy-weinberg probability for ss238354607.


  Submitted individual genotype for ss238354607 back to top
There is no individual genotype data for ss238354607.