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Submitted SNP(ss) Details: ss23837623           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0678373
RefSNP(rs#)rs4018608
Submitted Batch IDAFD_CHN_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_CHN_PANEL
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23837623|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 TGCCCAGCAT TTACCACTAG CCACAAGCAA AACGAGCCGC AGAACGGGGG AGCCTCTGCG
 GCTGGAGGGA CGAGGACTCT GGAGACTC
 CAAGGCACTC AC
 Y
 GGGCAGAGCA GC
 TGTCTTCCTG GTAGAAGGGG CCACAGGTGA ACAGGCCACA CCTGAGAAAG TGCAGTGTGC
 AAGGGCCCAA GCACAGTGAG GGCAGGGA

  Submitted Frequency for ss23837623 back to top
There is no frequency submission for ss23837623.


  dbSNP summary of Genotypes for ss23837623 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.73913044
C=0.26086956T/T=0.60869563
C/T=0.26086956
C/C=0.13043478
Pr(chiSq=2.407,df=1)
=0.150
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848C=0.56250000
T=0.43750000C/C=0.37500000
C/T=0.37500000
T/T=0.25000000
Pr(chiSq=1.361,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss23837623 back to top
There is no individual genotype data for ss23837623.