Submitted SNP(ss) Details: ss23842215

Submitted SNP(ss) Details: ss23842215

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0981501
RefSNP(rs#)	rs1836
Submitted Batch ID	AFD_CHN_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_CHN_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AACTATATTT CTTATAAATT ATAATATTCA CTAAGACTAA TAACAAGTTA GAATAAGTCT
 TTTCCATTGA TTTCATTGGT GTCTATTG
 ATAGATAAAC CC
 R
 CTGTGTCCTC AC
 GGCTATCGTT ATTCCGTTTG CAGCCTGGGA ACCTAAGGGT CTCACTGGCA GAAAGTGGAG
 CAGCCGGGAT CTGAATGCGG GAACCTGT

Submitted Frequency for ss23842215

There is no frequency submission for ss23842215.

dbSNP summary of Genotypes for ss23842215

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	G=0.93750000	A=0.06250000	G/G=0.87500000 A/G=0.12500000	Pr(chiSq=0.013,df=1) =1.000	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.91304350	A=0.08695652	G/G=0.82608694 A/G=0.17391305	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	A=0.54166669	G=0.45833334	A/G=0.75000000 A/A=0.16666667 G/G=0.08333334	Pr(chiSq=6.254,df=1) =0.020	Genotype Freq.

Submitted individual genotype for ss23842215

There is no individual genotype data for ss23842215.

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