Submitted SNP(ss) Details: ss23842239

Submitted SNP(ss) Details: ss23842239

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1072996
RefSNP(rs#)	rs6678176
Submitted Batch ID	AFD_CHN_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_CHN_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTCATATGTG ATCCCTATGG TGTTGTCCTA CAATCACCTA ATTCAGAATC ACTAGGTGTG
 TTTGTTTAAA ATGGAGATTT CTGGTCTC
 TGTACCAGGC AT
 Y
 GTGATTCAGG AC
 TTATGTGTAT CACAACCAGG CATATATATT TTCAACAAGT TTCCCATGTG ATTCTAATGC
 ATATGAGAGT TTCGGAACCA TAGGTCTA

Submitted Frequency for ss23842239

There is no frequency submission for ss23842239.

dbSNP summary of Genotypes for ss23842239

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	46	46	C=0.54347825	T=0.45652175	C/T=0.39130434 C/C=0.34782609 T/T=0.26086956	Pr(chiSq=1.028,df=1) =0.317	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.60869563	C=0.39130434	C/T=0.43478259 T/T=0.39130434 C/C=0.17391305	Pr(chiSq=0.175,df=1) =0.752	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	46	46	C=0.52173913	T=0.47826087	C/T=0.43478259 C/C=0.30434781 T/T=0.26086956	Pr(chiSq=0.381,df=1) =0.584	Genotype Freq.

Submitted individual genotype for ss23842239

There is no individual genotype data for ss23842239.

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