Submitted SNP(ss) Details: ss23842786

Submitted SNP(ss) Details: ss23842786

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0995363
RefSNP(rs#)	rs631357
Submitted Batch ID	AFD_CHN_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_CHN_PANEL

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGGCGTCTGT GCTGAGGATC TGGCTGGCCC GCTTAGATCG GAAGTAGTTG CTGGCAATGT
 TTTCACTGTT GCTCCGACTG AGCATGAG
 CCTGTAGCGG TC
 S
 TCCTCCTGCC GA
 GATGCAGATG CCCGTGGTCA CGTCCCCTTG TTTGTGCCCC TGGCACAGGG CTCCACAGCC
 TCTGGTATCC TGGGGCAGTG GGGGCCGC

Submitted Frequency for ss23842786

There is no frequency submission for ss23842786.

dbSNP summary of Genotypes for ss23842786

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	C=0.79166669	G=0.20833333	C/C=0.62500000 C/G=0.33333334 G/G=0.04166667	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	C=0.71739131	G=0.28260869	C/G=0.56521738 C/C=0.43478259	Pr(chiSq=1.732,df=1) =0.200	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	C=0.64583331	G=0.35416666	C/G=0.45833334 C/C=0.41666666 G/G=0.12500000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss23842786

There is no individual genotype data for ss23842786.

Disclaimer Privacy statement