NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss239050236           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CHB+JPT_935313_chr2_219783037
RefSNP(rs#)rs73993544
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:183

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss239050236|allelePos=201|len=401|taxid=9606|alleles='T/A'|mol=Genomic
 CAGGGAAAGG AGACACATCT TATTCCCTTC TGGGTTAGTC TTTGAGAGGG AAGTGGCCAA
 ACTTTTGTCA CCGTTCCATG GTCTGAGGCT TAGTGTCTTC AGAGGTTTCT TCCTGTCCCT
 GCTGCAGCTG CCACATGTCA GCATACACCC CACCTCGGGA CAACAGAGCC TCGTGTCTGG
 GGTGAGGAGA AAAGTGTGAG
 W
 CCTAACCATT AGTTTTACCC CGAGGGTCCT TGCCACCAGC CCACAGAGAG GACGGGATGG
 GAAGGGAGGT CCCCTCCAGA AGCCCCTGGG ACTTCATGCC CCCTTTCCTG GAGCCCCCAA
 TTCAGAAGAC CTGTCCTTTT GATCTATGTG TCTCTTACCG TCCCCTCTCC ACGATGCAGC
 CATCCTTGAT GACGAGGATC

  Submitted Frequency for ss239050236 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CHB+JPT_low_coverage_panel
EAST ASIA
120T=0.90833300
A=0.09166700
pilot_1_CHB+JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss239050236 back to top
No sufficient data to compute Hardy-weinberg probability for ss239050236.


  Submitted individual genotype for ss239050236 back to top
There is no individual genotype data for ss239050236.