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Submitted SNP(ss) Details: ss2399725           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0442954
RefSNP(rs#)rs631357
Submitted Batch ID001018_23
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/!t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2399725|allelePos=357|len=510|taxid=9606|alleles='C/G'|mol=Genomic
 GATAGATTTG GGGCTTGTGT ATCACCCCGG CCCCCCTGTT GGAGCTGGCA GGACACCCTG
 TTTTGAGCTT TGTAGGACAG AATAAGGCAC TTCCCATCTC AAGGAAGGGG AGGCCGGGTG
 CAGGCTTGGC TGGAGACTGA CTTCCTGGCC CCGAGCTGCC TGGGATCCCA CCCCCGAGTC
 CAGGATCTAC GGTGTAGGGT ACACCAGAGT GGGCAGTGCC TGCTCCAGCC CTGTGACAAC
 TTGGGGGAAG CTCGGGGCGG CCCCCACTGC CCCAGGATAC CAGAGGCTGT GGAGCCCTGT
 GCCAGGGGCA CAAACAAGGG GACGTGACCA CGGGCATCTG CATCTCGGCA GGAGGA
 S
 GACCGCTACA GGCTCATGCT CAGTCGGAGC AACAGTGAAA ACATTGCCAG CAACTACTTC
 CGATCTAAGC GGGCCAGCCA GATCCTCAGC ACAGACGCCA GGAAGAGCCT CAGTGAGTGT
 CCCTCCCCTG TCCCCACCCT CTCCACACAA CTG

  Submitted Frequency for ss2399725 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
AFRAME
- NORTH AMERICA 		32G/G=0.62500000
C/G=0.25000000
C/C=0.12500000
nsSNP_and_controlsHGBASE
EURAME
- NORTH AMERICA 		32G/G=0.68750000
C/G=0.31250000
C/C=0.00000000
nsSNP_and_controlsHGBASE


  dbSNP summary of Genotypes for ss2399725 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
EURAME
- NORTH AMERICA 		3232G=0.84375000
C=0.15625000G/G=0.68750000
C/G=0.31250000
C/C=0.00000000
Pr(chiSq=0.549,df=1)
=0.479		Genotype
Freq.
AFRAME
- NORTH AMERICA 		3232G=0.75000000
C=0.25000000G/G=0.62500000
C/G=0.25000000
C/C=0.12500000
Pr(chiSq=1.778,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss2399725 back to top
There is no individual genotype data for ss2399725.

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