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Submitted SNP(ss) Details: ss2400908           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0444777
RefSNP(rs#)rs869096886
Submitted Batch IDTSC-WUGSC-Sep-19-2002-SNP_SUBMISSION
Submitted DateSep 19, 2002
Publication CitedN.D.
First entry to dbSNPJun 14 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2400908|allelePos=437|len=1394|taxid=9606|alleles='A/G'|mol=Genomic
 AAAAACACAT AATTTGAATC AACACAACCA CCCACAGCCT AATTATTAGC ATCATCCCTC
 TACTATTTTT TAACCAAATC AACAACAACC TATTTAGCTG TTCCCCAACC TTTTCCTCCG
 ACCCCCTAAC AACCCCCCTC CTAATACTAA CTACCTGACT CCTACCCCTC ACAATCATGG
 CAAGCCAACG CCACTTATCC AGTGAACCAC TATCACGAAA AAAACTCTAC CTCTCTATAC
 TAATCTCCCT ACAAATCTCC TTAATTATAA CATTCACAGC CACAGAACTA ATCATATTTT
 ATATCTTCTT CGAAACCACA CTTATCCCCA CCTTGGCTAT CATCACCCGA TGAGGCAACC
 AGCCAGAACG CCTGAACGCA GGCACATACT TCCTATTCTA CACCCTAGTA GGCTCCCTTC
 CCCTACTCAT CGCACT
 R
 ATTTACACTC ACAACACCCT AGGCTCACTA AACATTCTAC TACTCACTCT CACTGCCCAA
 GAACTATCAA ACTCCTGAGC CAACAACTTA ATATGACTAG CTTACACAAT AGCTTTTATA
 GTAAAGATAC CTCTTTACGG ACTCCACTTA TGACTCCCTA AAGCCCATGT CGAAGCCCCC
 ATCGCTGGGT CAATAGTACT TGCCGCAGTA CTCTTGAAAC TAGGCGGCTA TGGTATAATA
 CGCCTCACAC TCATTCTCAA CCCCCTGACA AAACACATAG CCTACCCCTT CCTTGTACTA
 TCCCTATGAG GCATAATTAT AACAAGCTCC ATCTGCCTAC GACAAACAGA CCTAAAATCG
 CTCATTGCAT ACTCTTCAAT CAGCCACATA GCCCTCGTAG TAACAGCCAT TCTCATCCAA
 ACCCCCTGAA GCTTCACCGG CGCAGTCATT CTCATAATCG CCCACGGACT TACATCCTCA
 TTACTATTCT GCCTAGCAAA CTCAAACTAC GAACGCACTC ACAGTCGCAT CATAATCCTC
 TCTCAAGGAC TTCAAACTCT ACTCCCACTA ATAGCTTTTT GATGACTTCT AGCAAGCCTC
 GCTAACCTCG CCTTACCCCC CACTATTAAC CTACTGGGAG AACTCTCTGT GCTAGTAACC
 ACGTTCTCCT GATCAAATAT CACTCTCCTA CTTACAGGAC TCAACATACT AGTCACAGCC
 CTATACTCCC TCTACATATT TACCACAACA CAATGGGGCT CACTCACCCA CCACATTAAC
 AACATAAAAC CCTCATTCAC ACGAGAAAAC ACCCTCATGT TCATACACCT ATCCCCCATT
 CTCCTCCTAT CCCTCAACCC CGACATCATT ACCGGGTTTT CCTCTTGTAA ATATAGTTTA
 ACCAAAACAT CAGATTGTGA ATCTGACAAC AGAGGCTTAC GACCCCTTAT TTACCGA

  Submitted Frequency for ss2400908 back to top
There is no frequency submission for ss2400908.


  dbSNP summary of Genotypes for ss2400908 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.84070796
G=0.15929204A/A=0.84070796
G/G=0.15929204
Pr(chiSq=82.735,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176A=0.96590906
G=0.03409091A/A=0.96590906
G/G=0.03409091
Pr(chiSq=82.205,df=1)
=0.001
Genotype
Freq.
HAPMAP-LWK178178A=0.98876405
G=0.01123596A/A=0.98876405
G/G=0.01123596
Pr(chiSq=87.022,df=1)
=0.001
Genotype
Freq.
HAPMAP-MKK286286A=0.99300700
G=0.00699301A/A=0.99300700
G/G=0.00699301
Pr(chiSq=141.014,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176A=0.78409094
G=0.21590909A/A=0.78409094
G/G=0.21590909
Pr(chiSq=58.205,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss2400908 back to top
There is no individual genotype data for ss2400908.

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