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Submitted SNP(ss) Details: ss24059104           
Submitter
HandlePERLEGEN
Submitter SNP IDafd2257731
RefSNP(rs#)rs9414742
Submitted Batch IDAFD_CHN_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_CHN_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24059104|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 ATCCTTTAAG TTTTTCTAAA ACATTTGAAA GGAAATAGAG ATTATCTGAT ATATGCTGTA
 AAATGACAAA CATTGTCTGA CTCAACAT
 ATTTGAGATA AC
 Y
 AATTGTTGAT TT
 TAAAAATCCA GTCCCAAAGT AGCTTATGAA ATAGGATAAG AAACTTCATA TTAGAGTTAC
 AGAAGACAAA ATAATCAGTG TGATTCAT

  Submitted Frequency for ss24059104 back to top
There is no frequency submission for ss24059104.


  dbSNP summary of Genotypes for ss24059104 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848C=0.60416669
T=0.39583334C/C=0.41666666
C/T=0.37500000
T/T=0.20833333
Pr(chiSq=1.119,df=1)
=0.294
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646C=0.65217394
T=0.34782609C/C=0.47826087
C/T=0.34782609
T/T=0.17391305
Pr(chiSq=1.252,df=1)
=0.273
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848C=0.54166669
T=0.45833334C/T=0.50000000
C/C=0.29166666
T/T=0.20833333
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24059104 back to top
There is no individual genotype data for ss24059104.