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Submitted SNP(ss) Details: ss2415143           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0465551
RefSNP(rs#)rs1570663
Submitted Batch ID001018_23
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2415143|allelePos=391|len=406|taxid=9606|alleles='G/T'|mol=Genomic
 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aCAACCACCA CCACCCATGC TTTAAGAACA
 TGCATTTCTG TTGCACTATA AAATATAGGA GATAGGTCTT GCCACTGAGC TTAGAAAAAG
 AAAAAAAAAA AAAAAGACAG AATATGAGAG ACGGGAAAAT AAAGTGACTT AGGAATCCCA
 ATTACTGCCT TATGAACCCT GTGAGGACCC TCTTGGTCTG AGGATTACCA GCAGGAAACC
 AGAATGTGCT GCTTGTCCTC TGAGTTTGAG GCTGAAGTCT CTGTCCTTCA CCGGCAAGAT
 GGGCCACCGA ACCATCTACT TTCCCTTGGT ATTTATGACT GTGAGTACCT TTGAATGAGG
 GCCAGAGGGG GTTGAGGGTC TAGGTGCCAA
 K
 GGAGGGGCAT GAAAA

  Submitted Frequency for ss2415143 back to top
There is no frequency submission for ss2415143.


  dbSNP summary of Genotypes for ss2415143 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116T=0.73275864
G=0.26724139T/T=0.51724136
G/T=0.43103448
G/G=0.05172414
Pr(chiSq=0.587,df=1)
=0.479
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686T=0.75581396
G=0.24418604T/T=0.58139533
G/T=0.34883720
G/G=0.06976745
Pr(chiSq=0.130,df=1)
=0.752
Genotype
Freq.
HapMap-JPT8888T=0.72727275
G=0.27272728T/T=0.50000000
G/T=0.45454547
G/G=0.04545455
Pr(chiSq=0.936,df=1)
=0.343
Genotype
Freq.
HapMap-YRI118118T=0.82203388
G=0.17796610T/T=0.66101694
G/T=0.32203391
G/G=0.01694915
Pr(chiSq=0.598,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss2415143 back to top
There is no individual genotype data for ss2415143.

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