NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss241961758           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CHB+JPT_3846835_chr10_89716725
RefSNP(rs#)rs701848
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:118

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss241961758|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AAGGAAATTA GAGTTGCAGT AAACTTTCAA TGCTGCACAC AAAAAAAAGA CATTTGATTT
 TTCAGTAGAA ATTGTCCTAC ATGTGCTTTA TTGATTTGCT ATTGAAAGAA TAGGGTTTTT
 TTTTTTTTTT TTTTTTTTTT TTTTAAATGT GCAGTGTTGA ATCATTTCTT CATAGTGCTC
 CCCCGAGTTG GGACTAGGGC
 Y
 TCAATTTCAC TTCTTAAAAA AAATCATCAT ATATTTGATA TGCCCAGACT GCATACGATT
 TTAAGCGGAG TACAACTACT ATTGTAAAGC TAATGTGAAG ATATTATTAA AAAGGTTTTT
 TTTTCCAGAA ATTTGGTGTC TTCAAATTAT ACCTTCACCT TGACATTTGA ATATCCAGCC
 ATTTTGTTTC TTAATGGTAT

  Submitted Frequency for ss241961758 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CHB+JPT_low_coverage_panel
EAST ASIA
120T=0.61666697
C=0.38333300
pilot_1_CHB+JPT_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss241961758 back to top
No sufficient data to compute Hardy-weinberg probability for ss241961758.


  Submitted individual genotype for ss241961758 back to top
There is no individual genotype data for ss241961758.