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Submitted SNP(ss) Details: ss24210179           
Submitter
HandlePERLEGEN
Submitter SNP IDafd4213225
RefSNP(rs#)rs2400669
Submitted Batch IDAFD_CHN_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_CHN_PANEL
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24210179|allelePos=101|len=201|taxid=9606|alleles='T/G'|mol=Genomic
 GGCAACGGAG TGACCACAGC TACAGCCAAG GCACTAATTG CACCAATTCA AATTCATAAT
 TTTAAAAAGT TACCAAATTA CACTAACT
 TGCTAAAACA AG
 K
 AGAGGCACTT AA
 TAGATATTTC ACTTCCTTAA ACTAAGAACT CTCAAACTAC AGCATGTAAA AATCAGATAC
 ACAGCCAGGT GCAGTGGCTC ACGCCTAT

  Submitted Frequency for ss24210179 back to top
There is no frequency submission for ss24210179.


  dbSNP summary of Genotypes for ss24210179 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.64583331
G=0.35416666T/T=0.45833334
G/T=0.37500000
G/G=0.16666667
Pr(chiSq=0.780,df=1)
=0.403
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.65217394
G=0.34782609G/T=0.43478259
T/T=0.43478259
G/G=0.13043478
Pr(chiSq=0.040,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848G=0.56250000
T=0.43750000G/T=0.54166669
G/G=0.29166666
T/T=0.16666667
Pr(chiSq=0.243,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss24210179 back to top
There is no individual genotype data for ss24210179.

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