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Submitted SNP(ss) Details: ss24214987           
Submitter
HandlePERLEGEN
Submitter SNP IDafd1839105
RefSNP(rs#)rs4970387
Submitted Batch IDAFD_CHN_18-MAY-2004
Submitted DateAug 20, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_CHN_PANEL
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24214987|allelePos=101|len=201|taxid=9606|alleles='A/T'|mol=Genomic
 ATTGCTGGTA ATAAAAAATA AGTCTTTAAT GGTATAAAAG CAAACTTCAG AGAATGTTTT
 CTTTTCCCCA GTTGACATCT AAATTAAA
 AGCTGGAAAA AA
 W
 TTTTATGGCT TT
 ATGCGTTTTT CACTTTACAA TTTCAACTTT TTCTGGTTAA AATTTTTCCA AACAGATTCC
 TGTGTATTTG AAAGACAAAT TTTTTTTA

  Submitted Frequency for ss24214987 back to top
There is no frequency submission for ss24214987.


  dbSNP summary of Genotypes for ss24214987 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.91304350
A=0.08695652T/T=0.82608694
A/T=0.17391305
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4646T=0.76086956
A=0.23913044T/T=0.52173913
A/T=0.47826087
Pr(chiSq=0.957,df=1)
=0.343
Genotype
Freq.

  Submitted individual genotype for ss24214987 back to top
There is no individual genotype data for ss24214987.