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Submitted SNP(ss) Details: ss24237297           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0979262
RefSNP(rs#)rs11807848
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24237297|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 CCCTGTGCAG AAAGAGTCCT GGGTCCTCCG TCCTCTTCCA ACCTCCTGCT GAGAGTCCCA
 GGCAAGCACA GATTCCCAGG CTGGGGTA
 TCCCATCCAG AC
 Y
 TTCGCCCTCT GT
 ACCCTTCGTG CTGGGCCTGG GGTGGAGTGT ACTTGGAGGG GACCCATCCT CAATCCACCT
 CGTTCCGGAG AGCTGAGCCC TCAAGAAG

  Submitted Frequency for ss24237297 back to top
There is no frequency submission for ss24237297.


  dbSNP summary of Genotypes for ss24237297 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.62500000
C=0.37500000C/T=0.50000000
T/T=0.37500000
C/C=0.12500000
Pr(chiSq=0.107,df=1)
=0.752
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.71739131
C=0.28260869C/T=0.47826087
T/T=0.47826087
C/C=0.04347826
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848T=0.66666669
C=0.33333334T/T=0.45833334
C/T=0.41666666
C/C=0.12500000
Pr(chiSq=0.094,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24237297 back to top
There is no individual genotype data for ss24237297.